Laboratory of Computer and Information Science / Neural Networks Research Centre

tigre: Transcription factor Inference through Gaussian process Reconstruction of Expression

tigre is a Bioconductor package implementing the transcription factor target ranking method from the recent PNAS paper

A. Honkela, C. Girardot, E. H. Gustafson, Y.-H. Liu, E. E. M. Furlong, N. D. Lawrence and M. Rattray.
Model-based method for transcription factor target identification with limited data.
Proc. Natl. Acad. Sci. U S A 107(17):7793-7798 (2010).
doi:10.1073/pnas.0914285107

tigreBrowser

tigreBrowser is a web-based browser for tigre ranking results. It allows easy viewing, sorting and filtering of visualisations of models produced by tigre. The browser in implemented in Python which is required for operation. The browser can be installed as a CGI script on an existing web server (such as Apache) or run using the included simple server.

Download the package:
tigreBrowser-1.0.zip
tigreBrowser-1.0.tar.gz

To install, unpack the archive and use python setup.py install

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